migrated code to public repository

This commit is contained in:
mohsen-mansouryar 2016-03-09 19:52:35 +01:00
parent a7df82d7a4
commit f34dc653e5
233 changed files with 16279 additions and 186 deletions

View file

@ -0,0 +1,41 @@
.gradle
/local.properties
/.idea/workspace.xml
/.idea/libraries
.DS_Store
/build
/captures
### Android ###
# Built application files
*.apk
*.ap_
# Files for the Dalvik VM
*.dex
# Java class files
*.class
# Generated files
bin/
gen/
# Gradle files
.gradle/
build/
# Local configuration file (sdk path, etc)
local.properties
# Proguard folder generated by Eclipse
proguard/
# Log Files
*.log
# Android Studio Navigation editor temp files
.navigation/
### Android Patch ###
gen-external-apklibs

View file

@ -0,0 +1 @@
GazeHelper

View file

@ -0,0 +1,22 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="CompilerConfiguration">
<resourceExtensions />
<wildcardResourcePatterns>
<entry name="!?*.java" />
<entry name="!?*.form" />
<entry name="!?*.class" />
<entry name="!?*.groovy" />
<entry name="!?*.scala" />
<entry name="!?*.flex" />
<entry name="!?*.kt" />
<entry name="!?*.clj" />
<entry name="!?*.aj" />
</wildcardResourcePatterns>
<annotationProcessing>
<profile default="true" name="Default" enabled="false">
<processorPath useClasspath="true" />
</profile>
</annotationProcessing>
</component>
</project>

View file

@ -0,0 +1,3 @@
<component name="CopyrightManager">
<settings default="" />
</component>

View file

@ -0,0 +1,19 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="GradleSettings">
<option name="linkedExternalProjectsSettings">
<GradleProjectSettings>
<option name="distributionType" value="LOCAL" />
<option name="externalProjectPath" value="$PROJECT_DIR$" />
<option name="gradleHome" value="$APPLICATION_HOME_DIR$/gradle/gradle-2.2.1" />
<option name="gradleJvm" value="1.8" />
<option name="modules">
<set>
<option value="$PROJECT_DIR$" />
<option value="$PROJECT_DIR$/app" />
</set>
</option>
</GradleProjectSettings>
</option>
</component>
</project>

View file

@ -0,0 +1,22 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="EntryPointsManager">
<entry_points version="2.0" />
</component>
<component name="ProjectLevelVcsManager" settingsEditedManually="false">
<OptionsSetting value="true" id="Add" />
<OptionsSetting value="true" id="Remove" />
<OptionsSetting value="true" id="Checkout" />
<OptionsSetting value="true" id="Update" />
<OptionsSetting value="true" id="Status" />
<OptionsSetting value="true" id="Edit" />
<ConfirmationsSetting value="0" id="Add" />
<ConfirmationsSetting value="0" id="Remove" />
</component>
<component name="ProjectRootManager" version="2" languageLevel="JDK_1_7" default="true" assert-keyword="true" jdk-15="true" project-jdk-name="1.8" project-jdk-type="JavaSDK">
<output url="file://$PROJECT_DIR$/build/classes" />
</component>
<component name="ProjectType">
<option name="id" value="Android" />
</component>
</project>

View file

@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ProjectModuleManager">
<modules>
<module fileurl="file://$PROJECT_DIR$/GazeHelper.iml" filepath="$PROJECT_DIR$/GazeHelper.iml" />
<module fileurl="file://$PROJECT_DIR$/app/app.iml" filepath="$PROJECT_DIR$/app/app.iml" />
</modules>
</component>
</project>

View file

@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="VcsDirectoryMappings">
<mapping directory="" vcs="" />
</component>
</project>

View file

@ -0,0 +1,19 @@
<?xml version="1.0" encoding="UTF-8"?>
<module external.linked.project.id="GazeHelper" external.linked.project.path="$MODULE_DIR$" external.root.project.path="$MODULE_DIR$" external.system.id="GRADLE" external.system.module.group="" external.system.module.version="unspecified" type="JAVA_MODULE" version="4">
<component name="FacetManager">
<facet type="java-gradle" name="Java-Gradle">
<configuration>
<option name="BUILD_FOLDER_PATH" value="$MODULE_DIR$/build" />
<option name="BUILDABLE" value="false" />
</configuration>
</facet>
</component>
<component name="NewModuleRootManager" inherit-compiler-output="true">
<exclude-output />
<content url="file://$MODULE_DIR$">
<excludeFolder url="file://$MODULE_DIR$/.gradle" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
</component>
</module>

View file

@ -0,0 +1 @@
/build

View file

@ -0,0 +1,95 @@
<?xml version="1.0" encoding="UTF-8"?>
<module external.linked.project.id=":app" external.linked.project.path="$MODULE_DIR$" external.root.project.path="$MODULE_DIR$/.." external.system.id="GRADLE" external.system.module.group="GazeHelper" external.system.module.version="unspecified" type="JAVA_MODULE" version="4">
<component name="FacetManager">
<facet type="android-gradle" name="Android-Gradle">
<configuration>
<option name="GRADLE_PROJECT_PATH" value=":app" />
</configuration>
</facet>
<facet type="android" name="Android">
<configuration>
<option name="SELECTED_BUILD_VARIANT" value="debug" />
<option name="SELECTED_TEST_ARTIFACT" value="_android_test_" />
<option name="ASSEMBLE_TASK_NAME" value="assembleDebug" />
<option name="COMPILE_JAVA_TASK_NAME" value="compileDebugSources" />
<option name="SOURCE_GEN_TASK_NAME" value="generateDebugSources" />
<option name="ASSEMBLE_TEST_TASK_NAME" value="assembleDebugAndroidTest" />
<option name="COMPILE_JAVA_TEST_TASK_NAME" value="compileDebugAndroidTestSources" />
<option name="TEST_SOURCE_GEN_TASK_NAME" value="generateDebugAndroidTestSources" />
<option name="ALLOW_USER_CONFIGURATION" value="false" />
<option name="MANIFEST_FILE_RELATIVE_PATH" value="/src/main/AndroidManifest.xml" />
<option name="RES_FOLDER_RELATIVE_PATH" value="/src/main/res" />
<option name="RES_FOLDERS_RELATIVE_PATH" value="file://$MODULE_DIR$/src/main/res" />
<option name="ASSETS_FOLDER_RELATIVE_PATH" value="/src/main/assets" />
</configuration>
</facet>
</component>
<component name="NewModuleRootManager" inherit-compiler-output="false">
<output url="file://$MODULE_DIR$/build/intermediates/classes/debug" />
<output-test url="file://$MODULE_DIR$/build/intermediates/classes/androidTest/debug" />
<exclude-output />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/r/debug" isTestSource="false" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/aidl/debug" isTestSource="false" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/buildConfig/debug" isTestSource="false" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/rs/debug" isTestSource="false" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/res/rs/debug" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/res/generated/debug" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/r/androidTest/debug" isTestSource="true" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/aidl/androidTest/debug" isTestSource="true" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/buildConfig/androidTest/debug" isTestSource="true" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/source/rs/androidTest/debug" isTestSource="true" generated="true" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/res/rs/androidTest/debug" type="java-test-resource" />
<sourceFolder url="file://$MODULE_DIR$/build/generated/res/generated/androidTest/debug" type="java-test-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/res" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/assets" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/aidl" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/java" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/jni" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/debug/rs" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/main/res" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/assets" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/aidl" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/main/java" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/main/jni" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/main/rs" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/res" type="java-test-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/resources" type="java-test-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/assets" type="java-test-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/aidl" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/java" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/jni" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/src/androidTest/rs" isTestSource="true" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/assets" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/bundles" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/classes" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/coverage-instrumented-classes" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/dependency-cache" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/dex" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/dex-cache" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/exploded-aar/com.android.support/appcompat-v7/23.0.1/jars" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/exploded-aar/com.android.support/support-v4/23.0.1/jars" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/incremental" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/jacoco" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/javaResources" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/libs" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/lint" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/manifests" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/ndk" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/pre-dexed" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/proguard" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/res" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/rs" />
<excludeFolder url="file://$MODULE_DIR$/build/intermediates/symbols" />
<excludeFolder url="file://$MODULE_DIR$/build/outputs" />
<excludeFolder url="file://$MODULE_DIR$/build/tmp" />
</content>
<orderEntry type="jdk" jdkName="Android API 23 Platform" jdkType="Android SDK" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" exported="" name="support-v4-23.0.1" level="project" />
<orderEntry type="library" exported="" name="appcompat-v7-23.0.1" level="project" />
<orderEntry type="library" exported="" name="support-annotations-23.0.1" level="project" />
</component>
</module>

View file

@ -0,0 +1,25 @@
apply plugin: 'com.android.application'
android {
compileSdkVersion 23
buildToolsVersion "22.0.1"
defaultConfig {
applicationId "gazehelper.android.mmbrian.com.gazehelper"
minSdkVersion 14
targetSdkVersion 23
versionCode 1
versionName "1.0"
}
buildTypes {
release {
minifyEnabled false
proguardFiles getDefaultProguardFile('proguard-android.txt'), 'proguard-rules.pro'
}
}
}
dependencies {
compile fileTree(dir: 'libs', include: ['*.jar'])
compile 'com.android.support:appcompat-v7:23.0.1'
}

View file

@ -0,0 +1,17 @@
# Add project specific ProGuard rules here.
# By default, the flags in this file are appended to flags specified
# in /home/mmbrian/Android/Sdk/tools/proguard/proguard-android.txt
# You can edit the include path and order by changing the proguardFiles
# directive in build.gradle.
#
# For more details, see
# http://developer.android.com/guide/developing/tools/proguard.html
# Add any project specific keep options here:
# If your project uses WebView with JS, uncomment the following
# and specify the fully qualified class name to the JavaScript interface
# class:
#-keepclassmembers class fqcn.of.javascript.interface.for.webview {
# public *;
#}

View file

@ -0,0 +1,21 @@
<?xml version="1.0" encoding="utf-8"?>
<manifest xmlns:android="http://schemas.android.com/apk/res/android"
package="gazehelper.android.mmbrian.com.gazehelper" >
<application
android:allowBackup="true"
android:icon="@mipmap/ic_launcher"
android:label="@string/app_name"
android:theme="@style/AppTheme" >
<activity
android:name=".MainActivity"
android:label="@string/app_name" >
<intent-filter>
<action android:name="android.intent.action.MAIN" />
<category android:name="android.intent.category.LAUNCHER" />
</intent-filter>
</activity>
</application>
</manifest>

View file

@ -0,0 +1,108 @@
package gazehelper.android.mmbrian.com.gazehelper;
import android.app.Activity;
import android.media.AudioManager;
import android.media.ToneGenerator;
import android.os.Bundle;
import android.os.Handler;
import android.util.Log;
import android.view.View;
import android.widget.Button;
import android.widget.EditText;
import android.widget.TextView;
import android.widget.ViewFlipper;
import java.util.Timer;
import java.util.TimerTask;
public class MainActivity extends Activity {
public static final String CLASS_TAG = "GazeHelper";
ViewFlipper flipper;
Button btn_start;
EditText txt_gaze_dur, txt_bgaze_dur, txt_ngaze;
TextView txt_stats;
int gaze_dur, bgaze_dur, ngaze, cgaze;
long total_dur, start_time;
static Timer timer;
ToneGenerator toneG;
@Override
protected void onCreate(Bundle savedInstanceState) {
super.onCreate(savedInstanceState);
setContentView(R.layout.activity_main);
flipper = (ViewFlipper)findViewById(R.id.flipper);
txt_gaze_dur = (EditText)findViewById(R.id.txt_gaze_dur);
txt_bgaze_dur = (EditText)findViewById(R.id.txt_bgaze_dur);
txt_ngaze = (EditText)findViewById(R.id.txt_ngaze);
txt_stats = (TextView)findViewById(R.id.txt_stats);
timer = new Timer("Gaze Timer");
toneG = new ToneGenerator(AudioManager.STREAM_MUSIC, 100);
btn_start = (Button)findViewById(R.id.btn_start);
btn_start.setOnClickListener(new View.OnClickListener() {
@Override
public void onClick(View v) {
txt_stats.setText("Starting...");
gaze_dur = Integer.valueOf(txt_gaze_dur.getText().toString());
bgaze_dur = Integer.valueOf(txt_bgaze_dur.getText().toString());
ngaze = Integer.valueOf(txt_ngaze.getText().toString());
total_dur = (ngaze * gaze_dur + (ngaze - 1) * bgaze_dur) * 1000; // in milliseconds
flipper.showNext();
cgaze = 0;
start_time = -1;
Log.d(CLASS_TAG, "Started...");
timer = new Timer("Gaze Timer");
timer.schedule(new TimerTask() {
@Override
public void run() {
runOnUiThread(new Runnable() {
@Override
public void run() {
updateUI();
}
});
}
}, bgaze_dur * 1000, (gaze_dur + bgaze_dur) * 1000); // initial delay, recall delay
// first gaze is after 2 bgaze durations, later gazes start after a bgaze
}
});
}
public void updateUI() {
Log.d(CLASS_TAG, cgaze + "/" + ngaze);
if (cgaze++ >= ngaze) {
txt_stats.setText("Finished :)");
new Handler().postDelayed(new Runnable() {
@Override
public void run() {
runOnUiThread(new Runnable() {
@Override
public void run() {
flipper.showPrevious();
}
});
}
}, gaze_dur * 1000);
timer.cancel();
return;
}
toneG.startTone(ToneGenerator.TONE_CDMA_ALERT_CALL_GUARD, 200);
// if (start_time < 0)
// start_time = System.currentTimeMillis();
// txt_stats.setText((System.currentTimeMillis()-start_time)/1000 + "");
txt_stats.setText("Gaze at Target #" + cgaze);
}
}

View file

@ -0,0 +1,59 @@
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android"
xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent"
android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin"
android:paddingRight="@dimen/activity_horizontal_margin"
android:paddingTop="@dimen/activity_vertical_margin"
android:paddingBottom="@dimen/activity_vertical_margin" tools:context=".MainActivity">
<ViewFlipper
android:id="@+id/flipper"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:layout_centerInParent="true">
<LinearLayout
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:orientation="vertical"
android:layout_centerInParent="true">
<EditText
android:id="@+id/txt_gaze_dur"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:hint="Gaze Duration (Seconds)"
android:inputType="number"/>
<EditText
android:id="@+id/txt_bgaze_dur"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:hint="Between-Gaze Duration (Seconds)"
android:inputType="number"/>
<EditText
android:id="@+id/txt_ngaze"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:hint="Number of Targets"
android:inputType="number"/>
<Button
android:id="@+id/btn_start"
style="@android:style/TextAppearance.DeviceDefault.Medium"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:text="Start"/>
</LinearLayout>
<TextView
android:id="@+id/txt_stats"
style="@android:style/TextAppearance.DeviceDefault.Large"
android:layout_width="match_parent"
android:layout_height="wrap_content"
android:layout_gravity="center_vertical"
android:gravity="center"
android:text=""/>
</ViewFlipper>
</RelativeLayout>

View file

@ -0,0 +1,6 @@
<resources>
<!-- Example customization of dimensions originally defined in res/values/dimens.xml
(such as screen margins) for screens with more than 820dp of available width. This
would include 7" and 10" devices in landscape (~960dp and ~1280dp respectively). -->
<dimen name="activity_horizontal_margin">64dp</dimen>
</resources>

View file

@ -0,0 +1,5 @@
<resources>
<!-- Default screen margins, per the Android Design guidelines. -->
<dimen name="activity_horizontal_margin">16dp</dimen>
<dimen name="activity_vertical_margin">16dp</dimen>
</resources>

View file

@ -0,0 +1,6 @@
<resources>
<string name="app_name">GazeHelper</string>
<string name="hello_world">Hello world!</string>
<string name="action_settings">Settings</string>
</resources>

View file

@ -0,0 +1,8 @@
<resources>
<!-- Base application theme. -->
<style name="AppTheme" parent="Theme.AppCompat.Light.DarkActionBar">
<!-- Customize your theme here. -->
</style>
</resources>

View file

@ -0,0 +1,19 @@
// Top-level build file where you can add configuration options common to all sub-projects/modules.
buildscript {
repositories {
jcenter()
}
dependencies {
classpath 'com.android.tools.build:gradle:1.2.3'
// NOTE: Do not place your application dependencies here; they belong
// in the individual module build.gradle files
}
}
allprojects {
repositories {
jcenter()
}
}

View file

@ -0,0 +1,18 @@
# Project-wide Gradle settings.
# IDE (e.g. Android Studio) users:
# Gradle settings configured through the IDE *will override*
# any settings specified in this file.
# For more details on how to configure your build environment visit
# http://www.gradle.org/docs/current/userguide/build_environment.html
# Specifies the JVM arguments used for the daemon process.
# The setting is particularly useful for tweaking memory settings.
# Default value: -Xmx10248m -XX:MaxPermSize=256m
# org.gradle.jvmargs=-Xmx2048m -XX:MaxPermSize=512m -XX:+HeapDumpOnOutOfMemoryError -Dfile.encoding=UTF-8
# When configured, Gradle will run in incubating parallel mode.
# This option should only be used with decoupled projects. More details, visit
# http://www.gradle.org/docs/current/userguide/multi_project_builds.html#sec:decoupled_projects
# org.gradle.parallel=true

View file

@ -0,0 +1,6 @@
#Wed Apr 10 15:27:10 PDT 2013
distributionBase=GRADLE_USER_HOME
distributionPath=wrapper/dists
zipStoreBase=GRADLE_USER_HOME
zipStorePath=wrapper/dists
distributionUrl=https\://services.gradle.org/distributions/gradle-2.2.1-all.zip

164
code/recording/util/GazeHelper/gradlew vendored Normal file
View file

@ -0,0 +1,164 @@
#!/usr/bin/env bash
##############################################################################
##
## Gradle start up script for UN*X
##
##############################################################################
# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
DEFAULT_JVM_OPTS=""
APP_NAME="Gradle"
APP_BASE_NAME=`basename "$0"`
# Use the maximum available, or set MAX_FD != -1 to use that value.
MAX_FD="maximum"
warn ( ) {
echo "$*"
}
die ( ) {
echo
echo "$*"
echo
exit 1
}
# OS specific support (must be 'true' or 'false').
cygwin=false
msys=false
darwin=false
case "`uname`" in
CYGWIN* )
cygwin=true
;;
Darwin* )
darwin=true
;;
MINGW* )
msys=true
;;
esac
# For Cygwin, ensure paths are in UNIX format before anything is touched.
if $cygwin ; then
[ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
fi
# Attempt to set APP_HOME
# Resolve links: $0 may be a link
PRG="$0"
# Need this for relative symlinks.
while [ -h "$PRG" ] ; do
ls=`ls -ld "$PRG"`
link=`expr "$ls" : '.*-> \(.*\)$'`
if expr "$link" : '/.*' > /dev/null; then
PRG="$link"
else
PRG=`dirname "$PRG"`"/$link"
fi
done
SAVED="`pwd`"
cd "`dirname \"$PRG\"`/" >&-
APP_HOME="`pwd -P`"
cd "$SAVED" >&-
CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
# Determine the Java command to use to start the JVM.
if [ -n "$JAVA_HOME" ] ; then
if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
# IBM's JDK on AIX uses strange locations for the executables
JAVACMD="$JAVA_HOME/jre/sh/java"
else
JAVACMD="$JAVA_HOME/bin/java"
fi
if [ ! -x "$JAVACMD" ] ; then
die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
Please set the JAVA_HOME variable in your environment to match the
location of your Java installation."
fi
else
JAVACMD="java"
which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
Please set the JAVA_HOME variable in your environment to match the
location of your Java installation."
fi
# Increase the maximum file descriptors if we can.
if [ "$cygwin" = "false" -a "$darwin" = "false" ] ; then
MAX_FD_LIMIT=`ulimit -H -n`
if [ $? -eq 0 ] ; then
if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
MAX_FD="$MAX_FD_LIMIT"
fi
ulimit -n $MAX_FD
if [ $? -ne 0 ] ; then
warn "Could not set maximum file descriptor limit: $MAX_FD"
fi
else
warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
fi
fi
# For Darwin, add options to specify how the application appears in the dock
if $darwin; then
GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
fi
# For Cygwin, switch paths to Windows format before running java
if $cygwin ; then
APP_HOME=`cygpath --path --mixed "$APP_HOME"`
CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
# We build the pattern for arguments to be converted via cygpath
ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
SEP=""
for dir in $ROOTDIRSRAW ; do
ROOTDIRS="$ROOTDIRS$SEP$dir"
SEP="|"
done
OURCYGPATTERN="(^($ROOTDIRS))"
# Add a user-defined pattern to the cygpath arguments
if [ "$GRADLE_CYGPATTERN" != "" ] ; then
OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
fi
# Now convert the arguments - kludge to limit ourselves to /bin/sh
i=0
for arg in "$@" ; do
CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option
if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition
eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
else
eval `echo args$i`="\"$arg\""
fi
i=$((i+1))
done
case $i in
(0) set -- ;;
(1) set -- "$args0" ;;
(2) set -- "$args0" "$args1" ;;
(3) set -- "$args0" "$args1" "$args2" ;;
(4) set -- "$args0" "$args1" "$args2" "$args3" ;;
(5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
(6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
(7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
(8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
(9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
esac
fi
# Split up the JVM_OPTS And GRADLE_OPTS values into an array, following the shell quoting and substitution rules
function splitJvmOpts() {
JVM_OPTS=("$@")
}
eval splitJvmOpts $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS
JVM_OPTS[${#JVM_OPTS[*]}]="-Dorg.gradle.appname=$APP_BASE_NAME"
exec "$JAVACMD" "${JVM_OPTS[@]}" -classpath "$CLASSPATH" org.gradle.wrapper.GradleWrapperMain "$@"

View file

@ -0,0 +1,90 @@
@if "%DEBUG%" == "" @echo off
@rem ##########################################################################
@rem
@rem Gradle startup script for Windows
@rem
@rem ##########################################################################
@rem Set local scope for the variables with windows NT shell
if "%OS%"=="Windows_NT" setlocal
@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
set DEFAULT_JVM_OPTS=
set DIRNAME=%~dp0
if "%DIRNAME%" == "" set DIRNAME=.
set APP_BASE_NAME=%~n0
set APP_HOME=%DIRNAME%
@rem Find java.exe
if defined JAVA_HOME goto findJavaFromJavaHome
set JAVA_EXE=java.exe
%JAVA_EXE% -version >NUL 2>&1
if "%ERRORLEVEL%" == "0" goto init
echo.
echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
echo.
echo Please set the JAVA_HOME variable in your environment to match the
echo location of your Java installation.
goto fail
:findJavaFromJavaHome
set JAVA_HOME=%JAVA_HOME:"=%
set JAVA_EXE=%JAVA_HOME%/bin/java.exe
if exist "%JAVA_EXE%" goto init
echo.
echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
echo.
echo Please set the JAVA_HOME variable in your environment to match the
echo location of your Java installation.
goto fail
:init
@rem Get command-line arguments, handling Windowz variants
if not "%OS%" == "Windows_NT" goto win9xME_args
if "%@eval[2+2]" == "4" goto 4NT_args
:win9xME_args
@rem Slurp the command line arguments.
set CMD_LINE_ARGS=
set _SKIP=2
:win9xME_args_slurp
if "x%~1" == "x" goto execute
set CMD_LINE_ARGS=%*
goto execute
:4NT_args
@rem Get arguments from the 4NT Shell from JP Software
set CMD_LINE_ARGS=%$
:execute
@rem Setup the command line
set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
@rem Execute Gradle
"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS%
:end
@rem End local scope for the variables with windows NT shell
if "%ERRORLEVEL%"=="0" goto mainEnd
:fail
rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
rem the _cmd.exe /c_ return code!
if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
exit /b 1
:mainEnd
if "%OS%"=="Windows_NT" endlocal
:omega

View file

@ -0,0 +1 @@
include ':app'

View file

@ -0,0 +1,102 @@
float marker_image_width;
float screen_border_width;
float mark_pause; // seconds
// Represents a 9-point grid calibration board
class CalibrationBoard {
PVector[] marks;
float xgap, ygap, xOffset, yOffset;
// standard order for 9point grid, starting from center and then clockwise
int[] inds = new int[] {1, 2, 3, 8, 0, 4, 7, 6, 5};
public void shuffleCalibrationOrder() { // FisherYates shuffle
for (int i = inds.length - 1; i > 0; i--)
{
int index = int(random(0, i + 1));
int tmp = inds[index];
inds[index] = inds[i];
inds[i] = tmp;
}
}
public void generateInds(int grid_width) {
inds = new int[grid_width*grid_width];
for (int i=0; i<inds.length; i++) {
inds[i] = i;
}
}
public CalibrationBoard(int mode, int grid_width, float xOffset, float yOffset, float xgap, float ygap) {
if (mode == 1) {
this.xOffset = xOffset;
this.yOffset = yOffset;
generateInds(grid_width);
shuffleCalibrationOrder();
if (xgap == -1 || ygap == -1) {
computeGridMarks(grid_width, false);
} else {
this.xgap = xgap;
this.ygap = ygap;
computeGridMarks(grid_width, true);
}
} else {
int num = grid_width; // num of calibration points
inds = new int[num];
for (int i=0; i<inds.length; i++)
inds[i] = i;
generateRandomMarks();
}
}
public void generateRandomMarks() {
float w = width - 2*screen_border_width - marker_image_width;
float xOffset = screen_border_width + marker_image_width/2.;
float h = height - 2*screen_border_width - marker_image_width;
float yOffset = screen_border_width + marker_image_width/2.;
float x, y;
marks = new PVector[inds.length];
for (int i=0; i<inds.length; i++) {
x = random(0, w);
y = random(0, h);
marks[inds[i]] = new PVector(x + xOffset, y + yOffset);
}
}
public void computeGridMarks(int grid_width, boolean custom_gap_size) {
float w = width - 2*screen_border_width;
float h = height - 2*screen_border_width;
if (!custom_gap_size) {
xgap = (w - grid_width*marker_image_width)/float(grid_width-1);
ygap = (h - grid_width*marker_image_width)/float(grid_width-1);
}
marks = new PVector[grid_width*grid_width];
float x, y;
int c = 0;
for (int i=0; i<grid_width; i++) {
y = i * (ygap + marker_image_width) + screen_border_width + yOffset;
y += marker_image_width/2.;
for (int j=0; j<grid_width; j++) {
x = j * (xgap + marker_image_width) + screen_border_width + xOffset;
x += marker_image_width/2.;
marks[inds[c++]] = new PVector(x, y);
}
}
}
public void drawMarks() {
for (int i=0; i<marks.length; i++) {
drawMark(marks[i]);
fill(0);
//text(i + "", marks[i].x + 3, marks[i].y - 5);
}
}
private void drawMark(PVector pos) {
int w = 13;
stroke(0);
line(pos.x - w, pos.y, pos.x + w, pos.y);
line(pos.x, pos.y - w, pos.x, pos.y + w);
}
}

View file

@ -0,0 +1,69 @@
int marker_stroke_weight;
int marker_stroke_width;
float marker_move_step;
class Marker {
PVector p, c;
float w, h;
PImage image;
PVector dest;
boolean onDest;
public Marker(PImage img) {
this.image = img;
this.w = img.width;
this.h = img.height;
this.c = new PVector(width/2., height/2.);
this.p = new PVector(c.x - w/2., c.y - h/2.);
this.dest = this.p;
this.onDest = true;
}
public void draw() {
image(image, p.x, p.y);
stroke(255, 0, 0);
strokeWeight(marker_stroke_weight);
line(c.x - marker_stroke_width, c.y, c.x + marker_stroke_width, c.y);
line(c.x, c.y - marker_stroke_width, c.x, c.y + marker_stroke_width);
}
public void update() {
if (p.x != dest.x || p.y != dest.y) {
onDest = false;
PVector diff = dest.get();
diff.sub(p);
if (diff.mag() > marker_move_step) {
diff.normalize();
moveX(diff.x * marker_move_step);
moveY(diff.y * marker_move_step);
} else {
setX(dest.x);
setY(dest.y);
}
} else {
onDest = true;
}
}
public void moveX(float step) {
this.p.x += step;
this.c.x += step;
}
public void moveY(float step) {
this.p.y += step;
this.c.y += step;
}
public void setX(float x) {
this.p.x = x;
this.c.x = x + w/2.;
}
public void setY(float y) {
this.p.y = y;
this.c.y = y + h/2.;
}
}

View file

@ -0,0 +1,177 @@
Marker marker;
CalibrationBoard gc, gc_test;
String status = "not started";
int mark_pause_start = -1;
int curr_mark = 0;
boolean pause = true;
boolean finished = false;
boolean display_marks = true;
boolean calibration_mode = true;
boolean display_stats = true;
float start_delay = 3;
int count_down_begin;
void setup() {
fullScreen();
//size(640, 480);
frameRate(60);
screen_border_width = 0;
mark_pause = 2.0; // in seconds
marker_stroke_weight = 4;
marker_stroke_width = 13;
marker_move_step = 7;
PImage img = loadImage("1023.png");
marker_image_width = img.width;
marker = new Marker(img);
gc = new CalibrationBoard(1, 5, 0, 0, -1, -1); // means 5-point grid
gc_test = new CalibrationBoard(1, 4, (gc.xgap + marker_image_width)/2., (gc.ygap + marker_image_width)/2., gc.xgap, gc.ygap);
resetMarker();
}
void reset() {
mark_pause_start = -1;
curr_mark = 0;
pause = true;
finished = false;
display_marks = true;
calibration_mode = true;
gc = new CalibrationBoard(1, 5, 0, 0, -1, -1); // means 5-point grid
gc_test = new CalibrationBoard(1, 4, (gc.xgap + marker_image_width)/2., (gc.ygap + marker_image_width)/2., gc.xgap, gc.ygap);
resetMarker();
}
void resetMarker() {
float x, y;
if (calibration_mode) {
x = gc.marks[curr_mark].x - marker_image_width/2.;
y = gc.marks[curr_mark].y - marker_image_width/2.;
} else {
x = gc_test.marks[curr_mark].x - marker_image_width/2.;
y = gc_test.marks[curr_mark].y - marker_image_width/2.;
}
marker.dest = new PVector(x, y);
marker.setX(x);
marker.setY(y);
}
void draw() {
background(255);
if (!finished) {
marker.draw();
marker.update();
}
if (!pause) {
if (frameCount - count_down_begin > start_delay * frameRate) {
status = "started";
if (marker.onDest) {
if (mark_pause_start < 0) {
mark_pause_start = frameCount;
} else {
status = ((frameCount - mark_pause_start) / frameRate) + "";
if (frameCount - mark_pause_start > mark_pause * frameRate) {
if ((calibration_mode && curr_mark < gc.inds.length-1) || (!calibration_mode && curr_mark < gc_test.inds.length-1)) {
PVector destC;
if (calibration_mode) {
destC = gc.marks[++curr_mark];
} else {
destC = gc_test.marks[++curr_mark];
}
marker.dest = new PVector(destC.x - marker_image_width/2., destC.y - marker_image_width/2.);
} else {
status = "finished";
finished = true;
}
}
}
} else {
status = "moving";
mark_pause_start = -1;
}
} else {
text(((frameCount - count_down_begin)/frameRate) + "/" + start_delay, width/2, height-7);
}
} else {
status = "paused";
}
if (display_marks) {
gc.drawMarks();
gc_test.drawMarks();
}
//fill(255, 0, 0);
//noStroke();
//ellipse(marker.dest.x, marker.dest.y, 5, 5);
//fill(0, 0, 255);
//for (PVector m: gc.marks) {
// ellipse(m.x - marker_image_width/2., m.y - marker_image_width/2., 5, 5);
//}
if (finished) {
fill(255, 0, 0);
} else if (pause) {
fill(0);
} else {
fill(0, 0, 255);
}
if (display_stats) {
text("status: " + status, 3, 13);
String progress;
if (calibration_mode) {
progress = (curr_mark+1) + "/" + gc.inds.length;
} else {
progress = (curr_mark+1) + "/" + gc_test.inds.length;
}
text(progress, 3, height-7);
}
}
void keyPressed() {
println(keyCode);
switch (keyCode) {
case 32: // Space Button
pause = !pause;
display_marks = false;
if (!pause)
count_down_begin = frameCount;
break;
case 77: // M key
display_marks = !display_marks;
break;
case 67: // C key
curr_mark = 0;
calibration_mode = true;
println("calibration mode");
resetMarker();
break;
case 84: // T key
curr_mark = 0;
calibration_mode = false;
println("test mode");
resetMarker();
break;
case 82: // R key
reset();
break;
case 83: // S key
saveFrame("screenshot_###.png");
break;
case 72: // H key
display_stats = !display_stats;
break;
default:
break;
}
}

View file

@ -0,0 +1,2 @@
mode.id=processing.mode.java.JavaMode
mode=Java

View file

View file

@ -0,0 +1,18 @@
from __future__ import division
import numpy as np
import os, sys
if __name__ == '__main__':
try:
path = sys.argv[1]
time_stamps = np.load(os.path.join(path, 'world_timestamps.npy'))
pts = np.load(os.path.join(path, 'pupil_positions.npy'))
valid = filter(lambda e: e[1] > 0, pts) # filter all with zero confidence
csum = sum(e[1] for e in pts)
print 'Ratio: %s' % round(len(valid)*100/len(pts), 2) + '%'
if len(valid):
print 'Average Confidence:', csum/len(valid)
print 'Frames: %s' % len(time_stamps)
except Exception, err:
print 'Something went wrong.'
print err

View file

@ -0,0 +1,201 @@
import os, sys
import Image
from random import sample
'''
IMPORTANT:
- When printing images generated with this code you HAVE to ignore page margins! (use GIMP)
- Markers on a board must be separated by white borders or ArUco won't detect them
'''
ARUCO_MARKER_CREATOR = '/home/mmbrian/temp/aruco-1.3.0/build/utils/aruco_create_marker '
DESTINATION_DIR = '/home/mmbrian/HiWi/etra2016_mohsen/code/recording/util/markers/'
DEFAULT_MARKER_SIZE_IN_PIXELS = 64
DEFAULT_MARKER_BORDER_IN_PIXELS = 7 # only applies for random boards
DEFAULT_MARKER_SIZE_IN_MM = 40
A4_PADDING_IN_PIXELS = 50
def createMarker(marker_id, size_in_pixels, format = 'png'):
assert marker_id >= 0 and marker_id < 1024, 'Invalid Marker ID. Must be in Range 0-1023'
cmd = ARUCO_MARKER_CREATOR + '{0} ' + DESTINATION_DIR + '{0}.' + format + ' {1} 0'
os.popen(cmd.format(marker_id, size_in_pixels))
def handleMarkers():
'''
Usage:
marker.py num_of_markers size_in_pixels
marker.py -i marker_id size_in_pixels
'''
if len(sys.argv) > 3:
try:
createMarker(int(sys.argv[2]), int(sys.argv[3]))
except:
print 'Usage: marker.py -i marker_id size_in_pixels'
else:
try:
num = int(sys.argv[1])
assert num>0 and num<=1024
except:
print 'Invalid number of markers. please specify a number between 1 and 1024'
return
size = DEFAULT_MARKER_SIZE_IN_PIXELS
try:
size = int(sys.argv[2])
print 'Marker size set to', size, 'px'
except:
print 'Marker size set to default size', size, 'px'
print 'Creating', num, 'random markers...'
generateRandomMarkers(num, size)
def generateRandomMarkers(num, size):
# for i in range(num):
for i, _id in enumerate(sorted(sample(range(1024), num))):
createMarker(_id, size)
print i+1, '/', num
print 'Finished.'
def computeDimensions():
A4W, A4H = 210, 297 # A4 dimension in millimeters
MM2IN = 25.4 # millimeters per inch
dpi = -1 # Must be given (use xdpyinfo under linux)
marker_width = -1 # Arbitrary value which must be given by user (in millimeters)
try:
dpi = int(sys.argv[2])
assert dpi>0
except:
print sys.argv
print 'Invalid dpi.'
return
marker_width = DEFAULT_MARKER_SIZE_IN_MM
try:
marker_width = int(sys.argv[3])
print 'Marker size set to', marker_width, 'mm'
except:
print 'Marker size set to default size', marker_width, 'mm'
# Width and Height of A4 image in pixels
xWidth = A4W / MM2IN * dpi
yWidth = A4H / MM2IN * dpi
# Marker width in pixels
mWidth = marker_width / MM2IN * dpi
e = mWidth - int(mWidth) # subpixel error in marker width
eMM = e / dpi * MM2IN # subpixel error in millimeters (report to user)
print 'Marker size finally set to', marker_width - eMM, 'mm'
# Converting pixel values to real integers
xWidth, yWidth, mWidth = int(xWidth), int(yWidth), int(mWidth)
return xWidth, yWidth, mWidth
def removeMarkers():
print 'Removing old markers...'
os.popen('rm ' + DESTINATION_DIR + '*.png') # Removing previous markers
def generateGrid():
'''
Generates a picture of a 9-point calibration grid using random markers, the size of which is
calculated such that after printing the marker size is of a specified length in millimeters
Usage: marker.py dpi marker_size_in_mm
'''
xWidth, yWidth, mWidth = computeDimensions()
# Create markers with this pixel size
removeMarkers()
print 'Generating new markers...'
generateRandomMarkers(9, mWidth)
# Stitch markers and generate grid
print 'Creating grid...'
markers = []
for f in os.listdir(DESTINATION_DIR):
if f.endswith('.png'):
markers.append(Image.open(f))
grid = Image.new("RGB", (xWidth, yWidth), (255, 255, 255))
for row in range(3):
if row == 0:
y = A4_PADDING_IN_PIXELS
elif row == 1:
y = (yWidth - mWidth) / 2
else:
y = yWidth - A4_PADDING_IN_PIXELS - mWidth
for col in range(3):
if col == 0:
x = A4_PADDING_IN_PIXELS
elif col == 1:
x = (xWidth - mWidth) / 2
else:
x = xWidth - A4_PADDING_IN_PIXELS - mWidth
grid.paste(markers[row*3+col], (x, y))
grid.save(DESTINATION_DIR + 'grid_board/grid.jpg')
print 'Finished.'
def generateRandomBoard():
xWidth, yWidth, mWidth = computeDimensions()
# Get number of random markers
try:
n = int(sys.argv[4])
assert n>0 and n<150 # no more than 150 markers allowed
except:
print 'Please choose between 1 to 20 markers'
return
# Create markers with this pixel size
removeMarkers()
print 'Generating new markers...'
generateRandomMarkers(n, mWidth)
# Stitch markers and generate board
print 'Creating board...'
markers = []
for f in os.listdir(DESTINATION_DIR):
if f.endswith('.png'):
markers.append(Image.open(f))
board = Image.new("RGB", (xWidth, yWidth), (255, 255, 255))
# Now we have to randomly append markers to board in a way that they do not collide
# To simplify this, we gridify the image based on marker size and choose a random sample
# of grids (not entirely random but in case markers are small enough it gives a good sample)
w = (xWidth - 2*A4_PADDING_IN_PIXELS) / mWidth
h = (yWidth - 2*A4_PADDING_IN_PIXELS) / mWidth
w, h = int(w), int(h) # w and h are maximum row and column size for the grid
# Now markers would take w*mWidth pixels in a row with no borders, applying border size:
w = ((xWidth - 2*A4_PADDING_IN_PIXELS) - (w-1)*DEFAULT_MARKER_BORDER_IN_PIXELS) / mWidth
h = ((yWidth - 2*A4_PADDING_IN_PIXELS) - (h-1)*DEFAULT_MARKER_BORDER_IN_PIXELS) / mWidth
w, h = int(w), int(h) # w and h now also count for marker borders
xOffset = A4_PADDING_IN_PIXELS + ((xWidth - 2*A4_PADDING_IN_PIXELS) - w*mWidth - (w-1)*DEFAULT_MARKER_BORDER_IN_PIXELS)/2
yOffset = A4_PADDING_IN_PIXELS + ((yWidth - 2*A4_PADDING_IN_PIXELS) - h*mWidth - (h-1)*DEFAULT_MARKER_BORDER_IN_PIXELS)/2
grids = [(xOffset + c*mWidth + c*DEFAULT_MARKER_BORDER_IN_PIXELS,
yOffset + r*mWidth + r*DEFAULT_MARKER_BORDER_IN_PIXELS) for r in xrange(h) for c in xrange(w)]
print len(grids), 'possible positions exist for markers...'
n = min(n, len(grids))
for i, pos in enumerate(sample(grids, n)):
board.paste(markers[i], pos)
board.save(DESTINATION_DIR + 'random_board/board.jpg')
print 'Finished.'
def main():
assert len(sys.argv) > 1, 'Invalid number of arguments.'
if sys.argv[1] == 'grid':
generateGrid()
elif sys.argv[1] == 'rand':
generateRandomBoard()
else:
handleMarkers()
if __name__ == '__main__':
main()

View file

@ -0,0 +1,44 @@
from __future__ import division
import numpy as np
'''
Reference: https://stackoverflow.com/questions/22354094/pythonic-way-of-detecting-outliers-in-one-dimensional-observation-data
'''
def is_outlier(points, thresh=3.5):
"""
Returns a boolean array with True if points are outliers and False
otherwise.
Parameters:
-----------
points : An numobservations by numdimensions array of observations
thresh : The modified z-score to use as a threshold. Observations with
a modified z-score (based on the median absolute deviation) greater
than this value will be classified as outliers.
Returns:
--------
mask : A numobservations-length boolean array.
References:
----------
Boris Iglewicz and David Hoaglin (1993), "Volume 16: How to Detect and
Handle Outliers", The ASQC Basic References in Quality Control:
Statistical Techniques, Edward F. Mykytka, Ph.D., Editor.
"""
if len(points.shape) == 1:
points = points[:,None]
median = np.median(points, axis=0)
diff = np.sum((points - median)**2, axis=-1)
diff = np.sqrt(diff)
med_abs_deviation = np.median(diff)
modified_z_score = 0.6745 * diff / med_abs_deviation
return modified_z_score > thresh
def moving_average(interval, window_size):
window = np.ones(int(window_size))/float(window_size)
return np.convolve(interval, window, 'same')